Sentinel Laboratories Infection Diseases (Epilabo)

Version:
Status: inactive
How to create a CSV file for this data collection?

Start date: 01/04/2016
End date creation: 12/08/2024
End date submission: 12/08/2024
End date comments: 12/08/2024

Full view CSV column names Validation rules Reference lists Computed expressions Additional information CSV extract

1 Patient

patient identificator

National registry ID of the patient

Help

Please encode a social security identification number (SSIN). Please note that the patient ID is always pseudonymised before being transferred to Healthdata.

Technical specs

CSV column name:

patient_id

Required:

true

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.Patient

Data element:

PatientIdentificationNumber

Validation

The validity of the national register number is checked with the mod97 check.

Fields

Section help

Please encode a social security identification number (SSIN). Please note that the patient ID is always pseudonymised before being transferred to Healthdata.

text

Internal patient ID

Help

This field can be used to enter an internal ID or reference number. It is available for internal use only and is not transferred to Healthdata. If there is an integration between HD4DP and your organisation's patient administration system, additional patient identification information such as date of birth, sex and SSIN can be automatically enriched based on this internal patient ID. Please do not encode the social security identification number (SSIN) in this field. The SSIN must be encoded in the field 'National registry ID of the patient'.

Technical specs

CSV column name:

patient_id|internal_patient_id

Required:

false

boolean

Generated

Help

The patient_id|generated column can be set to 'TRUE' for an automatically generated patient_id.This column should only be added in case the patient_id is empty. If the column is set to 'TRUE', a patient_id is automatically generated based on the name, first name, date of birth and sex of the patient.

Technical specs

CSV column name:

patient_id|generated

Required:

false

Options

Label	Value
Yes	TRUE
No	FALSE

text

Name

Help

The name of the patient is never transferred to Healthdata and is available for your information only.

Technical specs

CSV column name:

patient_id|name

Required:

false

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.Patient

Data element:

LastName

text

First name

Help

The first name of the patient is never transferred and is available for your information only.

Technical specs

CSV column name:

patient_id|first_name

Required:

false

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.Patient

Data element:

FirstNames

date

Date of birth

Technical specs

Format:

DD/MM/YYYY

CSV column name:

patient_id|date_of_birth

Required:

true

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.Patient

Data element:

DateOfBirth

choice

Sex

Technical specs

CSV column name:

patient_id|sex

Required:

true

Options

Label	Value
Female	F
Male	M
Unknown	U

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.Patient

Data element:

Gender

text

Place of residence

Technical specs

CSV column name:

patient_id|place_of_residence

Length:

Reference list:

POSTAL_CODE

Required:

true

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.Patient

Data element:

Postcode

boolean

Deceased?

Technical specs

CSV column name:

patient_id|deceased

Required:

false

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.Patient

Data element:

DeathIndicator

Options

Label	Value
Yes	TRUE
No	FALSE

date

Date of death

Technical specs

Format:

DD/MM/YYYY

CSV column name:

patient_id|date_of_death

Only when:

Required:

false

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.Patient

Data element:

DateOfDeath

2 Laboratory

list

Laboratory entry

This is a container for multiple answers. See the reference documentation for more details. Below you can find the information about the fields of the container

List items

list

Sample

This is a container for multiple answers. See the reference documentation for more details. Below you can find the information about the fields of the container

Element conditions

Message	Expression
Sample origin: attention, no value from the provided reference list was used. If you can provide a value from the reference list (Snomed code), please do so.	$.sample_origin?$.sample_origin.code:true

List items

text

Sample ID

Technical specs

CSV column name:

laboratory_entry|0|sample|0|sample_id

Length:

100

Required:

true

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.TransferLaboratoryResult

Data element:

SpecimenNumber

date

Sample date

Technical specs

Format:

DD/MM/YYYY

CSV column name:

laboratory_entry|0|sample|0|sample_date

Required:

true

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.TransferLaboratoryResult

Data element:

DrawingDateTime

text

Sample origin

Technical specs

CSV column name:

laboratory_entry|0|sample|0|sample_origin

Length:

200

Reference list:

SAMPLE_ORIGIN

Required:

false

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.TransferLaboratoryResult

Data element:

SpecimenMaterial

list

Observation

This is a container for multiple answers. See the reference documentation for more details. Below you can find the information about the fields of the container

Element conditions

Message	Expression
Pathogen: attention, no value from the provided reference list was used. If you can provide a value from the reference list (Snomed code), please do so.	$.pathogen?$.pathogen.code:true
Test method: attention, no value from the provided reference list was used. If you can provide a value from the reference list (Snomed code), please do so.	$.test_method?$.test_method.code:true

List items

text

Pathogen

Technical specs

CSV column name:

laboratory_entry|0|observation|0|pathogen

Reference list:

PATHOGEN_EPILABO

Required:

true

text

Test method

Technical specs

CSV column name:

laboratory_entry|0|observation|0|test_method

Length:

200

Reference list:

TEST_METHOD

Required:

false

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.TransferLaboratoryResult

Data element:

TestMethod

text

Test name

Not to be included in the CSV.

Help

This field should not be provided and will only be activated in the future.

Technical specs

CSV column name:

laboratory_entry|0|observation|0|test_name

Length:

200

Required:

false

Read only

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.TransferLaboratoryResult

Data element:

Test

text

Test result

Not to be included in the CSV.

Help

This field should not be provided and will only be activated in the future.

Technical specs

CSV column name:

laboratory_entry|0|observation|0|test_result

Length:

200

Required:

false

Read only

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.TransferLaboratoryResult

Data element:

Result

text

Test result unit

Not to be included in the CSV.

Help

This field should not be provided and will only be activated in the future.

Technical specs

CSV column name:

laboratory_entry|0|observation|0|test_result_unit

Length:

200

Required:

false

Read only

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.TransferLaboratoryResult

Data element:

Result