Next Generation Sequencing (NGS)

Version:
Status: active
How to create a CSV file for this data collection?

Start date: 31/01/2021

Full view CSV column names Validation rules Reference lists Computed expressions Additional information CSV extract

1 Identification of the registering healthcare provider

text

Identification of the registering organization (laboratory)

Not to be included in the CSV.

Technical specs

CSV column name:

CD_ORG_ID

Computed:

Required:

false

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.HealthcareProvider

Data element:

HealthcareProviderIdentificationNumber

text

RIZIV/INAMI-code of the healthcare professional responsible for registration

Technical specs

CSV column name:

CD_RIZIV_RESPB_HLTHPROF

Reference list:

PHYSICIAN

Required:

true

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.HealthProfessional

Data element:

HealthProfessionalIdentificationNumber

2 Patient identification

patient identificator

National registry ID of the patient

Help

Please encode a social security identification number (SSIN). Please note that the patient ID is always pseudonymised before being transferred to Healthdata.

Technical specs

CSV column name:

patient_id

Required:

true

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.Patient

Data element:

PatientIdentificationNumber

Validation

The validity of the national register number is checked with the mod97 check.

Fields

Section help

Please encode a social security identification number (SSIN). Please note that the patient ID is always pseudonymised before being transferred to Healthdata.

text

Internal patient ID

Help

This field can be used to enter an internal ID or reference number. It is available for internal use only and is not transferred to Healthdata. If there is an integration between HD4DP and your organisation's patient administration system, additional patient identification information such as date of birth, sex and SSIN can be automatically enriched based on this internal patient ID. Please do not encode the social security identification number (SSIN) in this field. The SSIN must be encoded in the field 'National registry ID of the patient'.

Technical specs

CSV column name:

patient_id|internal_patient_id

Length:

Required:

false

Stable:

true

boolean

Generated

Help

The patient_id|generated column can be set to 'TRUE' for an automatically generated patient_id.This column should only be added in case the patient_id is empty. If the column is set to 'TRUE', a patient_id is automatically generated based on the name, first name, date of birth and sex of the patient.

Technical specs

CSV column name:

patient_id|generated

Required:

false

Options

Label	Value
Yes	TRUE
No	FALSE

text

Name

Help

The name of the patient is never transferred to Healthdata and is available for your information only.

Technical specs

CSV column name:

patient_id|name

Length:

Required:

noSSIN(Needed only if no national register number is entered)

Stable:

true

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.Patient

Data element:

LastName

text

First name

Help

The first name of the patient is never transferred and is available for your information only.

Technical specs

CSV column name:

patient_id|first_name

Length:

Required:

noSSIN(Needed only if no national register number is entered)

Stable:

true

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.Patient

Data element:

FirstNames

date

Date of birth

Technical specs

Format:

DD/MM/YYYY

CSV column name:

patient_id|date_of_birth

Required:

noSSIN(Needed only if no national register number is entered)

Validation

Date of birth cannot be in the future (error)
Date of birth cannot be after date of death (error)
Date of birth needs to be after 01/01/1920 (error)

choice

Sex

Technical specs

CSV column name:

patient_id|sex

Required:

noSSIN(Needed only if no national register number is entered)

Options

Label	Value
Female	F
Male	M
Unknown	U

text

Place of residence

Technical specs

CSV column name:

patient_id|place_of_residence

Reference list:

POSTAL_CODE

Required:

false

boolean

Deceased?

Technical specs

CSV column name:

patient_id|deceased

Required:

false

Options

Label	Value
Yes	TRUE
No	FALSE

date

Date of death

Technical specs

Format:

DD/MM/YYYY

CSV column name:

patient_id|date_of_death

Only when:

Required:

false

Validation

Date of death cannot be in the future (error)
Date of birth cannot be after date of death (error)
Date of receipt of the prescription cannot be after date of death (error)
Sampling date cannot be after date of death (error)

3 Medical data

text

Indication NGS convention (reimbursed)

Help

According to annex 2 and 3 of the NGS convention

Technical specs

CSV column name:

CD_INDICATN_NGS

Reference list:

NGS_INDIC

Required:

true

Validation

Date of receipt of the prescription must be after 31/12/2020 (error)
Date of receipt of the prescription must be after 31/12/2021 (error)

text

Indication PRECISION (not reimbursed)

Help

PRECISION is a Belgian clinical trial

Technical specs

CSV column name:

CD_INDICATN_PREC

Reference list:

ICDO

Only when:

Required:

true

4 Laboratory test

text

RIZIV/INAMI-code of the primary lab

Help

Lab that received the sample first

Technical specs

CSV column name:

CD_RIZIV_PRM_LAB

Reference list:

PITTER_PRIMARY_LAB

Required:

true

text

RIZIV/INAMI-code of the prescribing physician

Help

Please provide the NIHDI-code of the treating oncologist.

Technical specs

CSV column name:

CD_RIZIV_PRESCR_PHYS

Length:

Reference list:

PHYSICIAN

Required:

true

Stable:

true

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.HealthProfessional

Data element:

HealthProfessionalIdentificationNumber

date

Date of receipt of the prescription

Technical specs

Format:

DD/MM/YYYY

CSV column name:

DT_PRESCR

Required:

true

Validation

Date of receipt of the prescription cannot be in the future (error)
Date of receipt of the prescription cannot be after date of death (error)
Date of receipt of the prescription must be after 31/12/2020 (error)
Date of receipt of the prescription must be after 31/12/2021 (error)

date

Sampling date

Technical specs

Format:

DD/MM/YYYY

CSV column name:

DT_SAMPLING

Required:

true

Stable:

true

Mapping of the clinical building blocks (indicative only)

Concept:

be.en.hd.LaboratoryTestResult

Data element:

CollectionDateTime

Validation

Sampling date cannot be in the future (error)
Sampling date cannot be after date of death (error)

text

Sample ID (primary lab)

Technical specs

CSV column name:

TX_SAMPLE_ID_PRM_LAB

Length:

100

Required:

true

5 Attachments

text

VCF file

Technical specs

CSV column name:

TX_ATT_FILENAME

Required:

true